PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G090300.1
Common NamePHAVU_004G090300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 405aa    MW: 45723.7 Da    PI: 5.5533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G090300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14251296454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Phvul.004G090300.1 251 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 296
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-3321175IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.29E-14245301No hitNo description
PROSITE profilePS5088817.263247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18248321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17251309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKGKGREFID SASSSVLSNA LQQRLQFILQ TRPEWWVYAI FWQATKESDS RLTLEYGDGF  60
YMGSKGREGT EVRMSEEQTR NHVNDIEWFY RVSQTRSYAA GDGVVGCAFG SGVDVWLSGV  120
NEFEVNECDE RVGEARRHGI QTLVCVSVAR GILELGSHEV LKLDYGVLQM VKSVFEEREC  180
GSENPVRRRW MVVPGKEKEK ERRRELEGSS TDSSGPSDHD AEALLAFVEA NNSVPMMGRR  240
AGRERETLPV NHVEAERQRR EKLNQRFYAL RSAVPNVSKM DKASLLSDAV DYINELKAKI  300
SQLQSALEAE PEAQAQTQAQ PSSATTDMRV EVQMLGSEAM IRVQSLNINH PWARLMDALR  360
DVNLEILHAT ISNIKEMMLQ DVVVRVPHDL MTQEALQTAI MRRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-23191757192Transcription factor MYC3
4rqw_B5e-23191757192Transcription factor MYC3
4rs9_A5e-23191757192Transcription factor MYC3
4yz6_A5e-23191757192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151965.10.0hypothetical protein PHAVU_004G090300g
TrEMBLV7C1D90.0V7C1D9_PHAVU; Uncharacterized protein
STRINGGLYMA02G09670.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-51bHLH family protein